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Updating tools/ont_fast5_api tool to 4.0.2 4.1.0 4.1.3 #3825

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Updating tools/ont_fast5_api tool to 4.0.2 4.1.0 4.1.3 #3825

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planemo-autoupdate
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Hello! This is an automated update of the following tool: tools/ont_fast5_api. I created this PR because I think the tool's main dependency is out of date, i.e. there is a newer version available through conda.

Please see https://github.com/planemo-autoupdate/autoupdate for more information.

@planemo-autoupdate planemo-autoupdate changed the title Updating tools/ont_fast5_api tool version(s) Updating tools/ont_fast5_api tool to 4.0.2 Mar 14, 2022
@planemo-autoupdate planemo-autoupdate changed the title Updating tools/ont_fast5_api tool to 4.0.2 Updating tools/ont_fast5_api tool to 4.0.2 4.1.0 Oct 24, 2022
@planemo-autoupdate planemo-autoupdate changed the title Updating tools/ont_fast5_api tool to 4.0.2 4.1.0 Updating tools/ont_fast5_api tool to 4.0.2 4.1.0 4.1.1 Dec 26, 2022
@bernt-matthias
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compress_fast5 now has a --sanitize option to remove optional groups.

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  • fast5_subset now displays errors (but continues processing) when it encounters input fast5 files it can't read.
    • not sure what to do about this .. should the user see some warning .. or can we ignore it
  • Added tools yield_fast5_reads to conversion_tools ..
    • seems absent from the conda env
  • Script demux_fast5 for demultiplexing fast5 reads based on column in summary file, e.g. for barcoded experiments
    • feel not competent to add this.

@bernt-matthias
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@bgruening do you know anyone who could finish this? I have no background knowledge on these tools. Or should we just merge?

@gxydevbot gxydevbot changed the title Updating tools/ont_fast5_api tool to 4.0.2 4.1.0 4.1.1 Updating tools/ont_fast5_api tool to 4.0.2 4.1.0 4.1.2 Dec 25, 2023
@gxydevbot gxydevbot changed the title Updating tools/ont_fast5_api tool to 4.0.2 4.1.0 4.1.2 Updating tools/ont_fast5_api tool to 4.0.2 4.1.0 4.1.3 Mar 4, 2024
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot
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There are new updates, they have been integrated to the PR, check the file diff.

@gxydevbot gxydevbot force-pushed the tools/ont_fast5_api branch from 9a6e45e to 0e40f51 Compare October 7, 2024 04:51
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@planemo-autoupdate @bernt-matthias @gxydevbot